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参考文献

引言 有传染性的活液

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Flint, S. J. 2009. . 3rd ed. Washington, DC: ASM Press.

Kay, L. E. 1986. W. M. Stanley's crystallization of the tobacco mosaic virus, 1930–1940. 77:450–72.

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1 并不普通的感冒

Arden, K. E., and I. M. Mackay. 2009. Human rhinoviruses: Coming in from the cold. 1:44.

Briese, T., N. Renwick, M. Venter, et al. 2008. Global distribution of novel rhinovirus genotype. 14:944.

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Palmenberg, A. C., D. Spiro, R. Kuzmickas, et al. 2009. Sequencing and analyses of all known human rhinovirus genomes reveal structure and evolution. 324:55–59.

2 祈求星星的照看

Barry, J. M. 2004. . New York: Viking.

Dugan, V. G., R. Chen, D. J. Spiro, et al. 2008. The evolutionary genetics and emergence of avian influenza viruses in wild birds.4(5):e1000076.

Rambaut, A., O. G. Pybus, M. I. Nelson, C. Viboud, J. K. Taubenberger,and E.C. Holmes. 2008. The genomic and epidemiological dynamics of human influenza A virus.453:615–19.

Smith, G. J. D., D. Vijaykrishna, J. Bahl, et al. 2009. Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic. 459:1122–25.

Taubenberger, J. K., and D. M. Morens. 2008. The pathology of influenza virus infections. 3:499–522.

3 长角的兔子

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Doorbar, J. 2006. Molecular biology of human papillomavirus infection and cervical cancer. 110:525.

García-Vallvé, S., Á. Alonso, and I. G. Bravo. 2005. Papillomaviruses:Different genes have different histories. 13:514–21.

García-Vallvé, S., J. R. Iglesias-Rozas, Á. Alonso, and I. G. Bravo. 2006. Different papillomaviruses have different repertoires of transcription factor binding sites: Convergence and divergence in the upstream regulatory region. 6:20.

Horvath, C. A. J., G. A. V. Boulet, V. M. Renoux, P. O. Delvenne, and J.-P.J. Bogers. 2010. Mechanisms of cell entry by human papillomaviruses:An overview. 7:11.

Martin, D., and J. S. Gutkind. 2008. Human tumor-associated viruses and new insights into the molecular mechanisms of cancer. 27(Suppl2):S31–42.

Orlando, P. A., R. A. Gatenby, A. R. Giuliano, and J. S. Brown.2012. Evolutionary ecology of human papillomavirus: trade-offs,coexistence, and origins of high-risk and low-risk types. 205:272–79.

Schiffman, M., R. Herrero, R. DeSalle, et al. 2005. The carcinogenicity of human papillomavirus types reflects viral evolution.337:76–84.

Shulzhenko, N., H. Lyng, G. F. Sanson, and A. Morgun. 2014. Ménage à trois: An evolutionary interplay between human papillomavirus, a tumor, and a woman. 22:345–53.

4 敌人的敌人

Adhya, S., C. R. Merril, and B. Biswas. 2014. Therapeutic and prophylactic applications of bacteriophage components in modern medicine. 4:a012518.

Brussow, H. 2005. Phage therapy: The Escherichia coli experience. 151:2133.

Deresinski, S. 2009. Bacteriophage therapy: Exploiting smaller fleas.48:1096–101.

Summers, W. C. 2001. Bacteriophage therapy. Annual Reviews in 55:437–51.

5 感染的海洋

Angly, F. E., B. Felts, M. Breitbart, et al. 2006. The marine viromes of four oceanic regions. 4 (11):e368.

Breitbart, M. 2012. Marine viruses: Truth or dare. 4:425–48.

Brussaard, C. P. D., S. W. Wilhelm, F. Thingstad, et al. 2008. Global-scale processes with a nanoscale drive: The role of marine viruses. 2:575–78.

Danovaro, R., A. Dell'Anno, C. Corinaldesi, et al. 2008. Major viral impact on the functioning of benthic deep-sea ecosystems. 454:1084–87.

Desnues, C., B. Rodriguez-Brito, S. Rayhawk, et al. 2008. Biodiversity and biogeography of phages in modern stromatolites and thrombolites.452:340–43.

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Rohwer, F., and R. Vega Thurber. 2009. Viruses manipulate the marine environment. 459:207–12.

Rohwer, F., M. Youle, H. Maughan, and N. Hisakawa. 2015. . San Diego: Wholon.

Suttle, C. A. 2007. Marine viruses—major players in the global ecosystem. 5:801–12.

Van Etten, J. L., L. C. Lane, and R. H. Meints. 1991. Viruses and viruslike particles of eukaryotic algae. 55:586.

6 人体里的“寄生者”

Blikstad, V., F. Benachenhou, G. O. Sperber, and J. Blomberg. 2008.Evolution of human endogenous retroviral sequences: A conceptual account. 65:3348–65.

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Jern, P., and J. M. Coffin. 2008. Effects of retroviruses on host genome function. 42:709–32.

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Lee, A., A. Nolan, J. Watson, and M. Tristem. 2013. Identification of an ancient endogenous retrovirus, predating the divergence of the placental mammals. B:368:20120503.

Ruprecht, K., J. Mayer, M. Sauter, K. Roemer, and N. Mueller-Lantzsch.2008. Endogenous retroviruses and cancer. 65:3366–82.

Tarlinton, R., J. Meers, and P. Young. 2008. Biology and evolution of the endogenous koala retrovirus. 65:3413–21.

Weiss, R. A. 2006. The discovery of endogenous retroviruses. 3:67.

Weiss, R. A. 2013. On the concept and elucidation of endogenous retroviruses. B: 368:20120494.

7 新的灾难

D'arca, M., A. Ayoubaa, A. Estebana, et al. 2015. Origin of the HIV-1 group O epidemic in western lowland gorillas. Published ahead of print, March 2, 2015.doi:10.1073/pnas.1502022112.

Fan, H. 2011. . 6th ed. Sudbury, MA: Jones and Bartlett.

Faria, N. R., A. Rambaut, M. A. Suchard, et al. 2014. The early spread and epidemic ignition of HIV-1 in human populations. 346:56–61.

Fauci, A. S., and H. D. Marston. 2014. Ending AIDS–is an HIV vaccine necessary? 370:495–98.

Gilbert, M. T. P., A. Rambaut, G. Wlasiuk, T. J. Spira, A. E. Pitchenik,and M. Worobey. 2007. The emergence of HIV/AIDS in the Americas and beyond. 104:18566.

Keele, B. F. 2006. Chimpanzee reservoirs of pandemic and nonpandemic HIV-1. 313:523–26.

Montagnier, L. 2010. 25 Years after HIV discovery: Prospects for cure and vaccine. 397:248–54.

Worobey, M., M. Gemmel, D. E. Teuwen, et al. 2008. Direct evidence of extensive diversity of HIV-1 in Kinshasa by 1960. 455:661–64.

8 融入美国

Brault, A. C. 2009. Changing patterns of West Nile virus transmission:Altered vector competence and host susceptibility. 40:43.

Diamond, M. S. 2009. Progress on the development of therapeutics against West Nile virus. 83:214–27.

Gould, E. A., and S. Higgs. 2009. Impact of climate change and other factors on emerging arbovirus diseases. 103:109–21.

Hamer, G. L, U. D. Kitron, T. L. Goldberg, et al. 2009. Host selection by Culex pipiens mosquitoes and West Nile virus amplification.80:268.

Sfakianos, J. N. 2009. . 2nd ed. New York: Chelsea House.

Venkatesan M., and J. L. Rasgon. 2010. Population genetic data suggest a role for mosquito-mediated dispersal of West Nile virus across the western United States. 19:1573–84.

9 预测下一场瘟疫

Holmes, E. C., and A. Rambaut. 2004. Viral evolution and the emergence of SARS coronavirus. 359:1059–65.

Parrish, C. R., E. C. Holmes, D. M. Morens, et al. 2008. Cross-species virus transmission and the emergence of new epidemic diseases. 72:457–70.

Pigott, D. M., N. Golding, A. Mylne, et al. 2014. Mapping the zoonotic niche of Ebola virus disease in Africa. 3:e04395.

Piot, P. 2013. . New York: W. W. Norton.

Quammen, D. 2012. . New York: W. W. Norton.

Raj, V. S., A. D. Osterhaus, R. A. Fouchier, and B. L. Haagmans. 2014.MERS: Emergence of a novel human coronavirus. 5:58–62.

Sack, K., S. Fink, P. Belluck, and A. Nossiter. 2014. Ebola's deadline escape. , December 30, 2014, D1.

Skowronski, D. M., C. Astell, R. C. Brunham, et al. 2005. Severe acute respiratory syndrome (SARS): A year in review. 56:357–81.

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10 漫长的告别

Damon, I. K., C. R. Damaso, and G. McFadden. 2014. Are we there yet?The smallpox research agenda using variola virus. 10:e1004108.

Dormitzer, P. R., P. Suphaphiphat, D. G. Gibson, et al. 2013. Synthetic generation of influenza vaccine viruses for rapid response to pandemics. 5:185ra68.

Hughes, A. L., S. Irausquin, and R. Friedman. 2010. The evolutionary biology of poxviruses. Infection, 10:50–59.

Jacobs, B. L., J. O. Langland, K. V. Kibler, et al. 2009. Vaccinia virus vaccines: Past, present and future. 84:1–13.

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Koplow, D. A. 2003. .Berkeley: University of California Press.

Kosuri, S., and G. M. Church. 2014. Large-scale de novo DNA synthesis:Technologies and applications. 11:499–507.

Mariner, J. C., J. A. House, C. A. Mebus, et al. 2012. Rinderpest eradication: Appropriate technology and social innovations. 337:1309–12.

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尾声 冷却塔中的“外来客”

Abrahão, J. S., F. P. Dornas, L. C. F. Silva, et al 2014. Acanthamoeba polyphaga mimivirus and other giant viruses: an open field to outstanding discoveries. 11:120.

Claverie, J. M., and C. Abergel. 2013. Open questions about giant viruses.85:25-56.

Forterre, P. 2010. Defining life: The virus viewpoint.40:151–60.

Forterre, P., M. Krupovic, and D. Prangishvili. 2014. Cellular domains and viral lineages. 22:554–58.

Katzourakis, A., and A. Aswad. 2014. The origins of giant viruses,virophages and their relatives in host genomes. 12:51.

Koonin, E. V., and V. V. Dolja. 2014. Virus world as an evolutionary network of viruses and capsidless selfish elements.78:278–303.

Moreira, D., and C. Brochier-Armanet. 2008. Giant viruses, giant chimeras: The multiple evolutionary histories of mimivirus genes.8:12.

Moreira, D., and P. Lopez-Garcia. 2009. Ten reasons to exclude viruses from the tree of life. 7:306–11.

Ogata, H., and J. M. Claverie. 2008. How to infect a mimivirus. 321:1305.

Raoult, D., and P. Forterre. 2008. Redefining viruses: Lessons from mimivirus. 6:315–19.

Raoult, D., B. La Scola, and R. Birtles. 2007. The discovery and characterization of mimivirus, the largest known virus and putative pneumonia agent. 45:95–102.

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